species:   Scscl
pid:       PID1536
parent:    Ssc-milR-12
paralog:   
locus:     NW_001820801.1:19368-19437
matures:   ['UUGCCCAACGCCAUCCUGUCCU', 'GAGCGGGAUCACCGGGUAUGU']
srr:       SRR12527898
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram NW_001820801.1:19368-19437

8 out of bounds
3 alignments
3 proper strand
2 stranded perfect matches

*************************                      ***********************
AAUAAUAAAAUUGCCCAACGCCAUCCUGUCCUCGAAUCGGGGAGCGGGAUCACCGGGUAUGUAUACAAUC
...........(((((...(..((((((((((((...)))))).))))))..).)))))...........
----------UUGCCCAACGCCAUCCUGUCCU-------------------------------------- l=22 a=0 c
-----------------------------------------GAGCGGGAUCACCGGGUAUGU-------- l=21 a=0 c*
-------------------------------------------------UCACCGGGUAUGUAUACAAUC l=21 a=1 ma
--UAAUAAAAUUGCCCAACGCCAUC--------------------------------------------- l=23 a=0 ma*

-------------------------------------------------UCACCGGGUAUGUAUACAAUC l=21 a=1 (ma)
--------------------------UGUCCUCGAAUCGcGGAGCGG----------------------- l=21 a=1 
-------------------------CUGUCCUCGAAUCGGGGAG-------------------------- l=19 a=1 

mb-01010
ax-1001011
ku-01
ss-100111101100
fn-011
